Malware Found; Issues Raised

Hi.

A few weeks ago I performed the malware removal guide process. I downloaded and ran the programs exactly as instructed.

Two of the programs (maybe 3?) found malware. However, according to the instructions, I am NOT supposed to delete the malware that was detected. How then, is my computer safe, if the malware are still intact in my computer?

This is important, because I want to know which of the anti-malware programs I am supposed to delete now that I have completed the scans; and which programs do I keep?

[Please note that this new thread is NOT a continuation of the thread I started several months ago; this is a different computer I'm currently working on.]

One more thing: I also completed the "How to Protect yourself from malware" thread on this forum, and when I downloaded the Comodo Personal Firewall, it said that it was incompatible with MalwareBytes Program. What should I do, because I want to use MalwareBytes as an "after the fact" scanning tool?

Thank you very much.
Beseech

 

Hey, here are the logs from the scans. Note that today, I ran another MalwareBytes scan. It detected another 177 files. I did NOT delete them; I am awaiting instructions from you. I don't want to make the situation worse.

All 177 files were PUP.optional.Pricegong.A or PUP.Optional.Babylon.A

Please help.

 

Done. They are now deleted.

Done. There were over 7 malicious programs and over 800 other malicious files that it detected. I removed them.

Done.

• 
  
  Unfortunately, this was impossible for me to complete. I spent much time and effort and was met with myriad obstacles. However, most may be of no importance. I did manage to download the program.
  
  I shut down my Avira anti-virus and Comodo firewall.
  I downloaded the program, but when I click to run it, either nothing happens, or it gives a blank cmd.exe window; and nothing happens after that.
  
  
  So to successfully launch it, I must click "Run in Comodo Sandbox". (Comodo is my firewall, which is supposedly disabled at this point.)
  The program begins, but can't get past the first step; namely, creating a registry backup. It says that "access is denied."
  
  It then tries to go to the next step; namely, creating startup. Sometimes it stops here, with going to the next step. Other times, it goes farther, "creating" different things, but has never gotten past "checking registry."
  
  So what do I do now?
  
  

This last step I did not do yet; I am waiting to run JRT first, but I will do another MGT scan right away if you want me to.

Thank you.