Secunia Software Inspector

When I ran Secunia Software Inspector it told me that the version of Java I have installed on my computer is out of date.
It tells me that it is finding 3 out-of-date files:
Once here:
C:\Program Files\Java\jre1.6.0_04\bin\java.exe
Twice here:
C:\Windows\System32\java.exe
and three times here:
C:\Program Files\Adobe\Adobe Flash CS3\JVM\bin\java.exe

I updated Java via the Sun website and consequently the first and second warnings disappeared when I reran the Software Inspector.
The software inspector however is still finding an out-of-date Java version here:
C:\Program Files\Adobe\Adobe Flash CS3\JVM\bin\java.exe

Question is: How do I update Java for Adobe Flash CS3?
Is it adequate to copy the updated file "java.exe" from "C:\Program Files\Java\jre1.6.0_04\bin\" to "C:\Program Files\Adobe\Adobe Flash CS3\JVM\bin\" or do I need to do anything else?

Any help will be much appreciated.