Mapping a website

Hey all! It has been a horribly long time since I've posted here - I've missed you guys

Not sure if this post should go under "Software" or here. Figured I'd start here and see where I ended up...

I'm working on a project that requires a complete database and website map. Background:
- Oracle Database with a front-end built in ColdFusion, Java, and Oracle Forms
- Web interface has numerous frames and subqueries (the top 1/3 of the screen only changes when going into PDFs or specific reports; majority of the time though it's constant).
- I have gone through and printed off all the code for each of the pages and have reviewed it to highlight the queries, modifications etc.

I'm OK doing the database mapping as I've done this dozens of times in the past. Where I'm stuck is the Website mapping. I've googled all morning trying to find examples / steps to take / recommendations, with no luck. If it were a simple website (Page with Links leading to other pages with links) I would be OK using Visio 2003's Web Mapping. However, for my website, because of the frames etc., all I get is a complex mass of illogical relationships.

Any ideas? The website itself is not complicated as far as navigation, so it should not take me long to get everything together; I just don't know *what* I should get or how to present it........

Any thoughts would be appreciated!
Chris